.. ALISEQ documentation master file, created by
   sphinx-quickstart on Tue Oct 30 13:36:20 2018.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to ALISEQ's documentation!
==================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   welcome
   setup
   pipeline1
   pipeline2
   workflow
   more
   modules

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`