read_buffalo_xml_data.py

read_buffalo_xml_data.processXML()[source]

used to construct ‘resources/buffalo_sample_metadata.csv’

# it uses the following xml files “ERS2495773-ERS2495833.xml”, “ERS2495835-ERS2495900.xml”,”ERS2495902-ERS2495992.xml”

# which are obtained from here (there is an xml download link on the page): https://www.ebi.ac.uk/ena/data/view/ERS2495773-ERS2495833 https://www.ebi.ac.uk/ena/data/view/ERS2495835-ERS2495900 https://www.ebi.ac.uk/ena/data/view/ERS2495902-ERS2495992